Your English writing platform
Discover LudwigExact(1)
By applying metaheuristics for global parameter optimization and maximum likelihood estimators to a Hidden Markov Model (HMM) representation of SIDER sequences (see Methods), we generated a high quality alignment comparable to that published for LmSIDER2 [ 21].
Similar(59)
However, we get a speedup of 4.25 even in the highest tested quality setting, where the quality of the produced alignment is comparable to other sequence structure alignment methods.
However, we get a speedup of 4.25 even in the highest quality setting, where the quality of the produced alignment is comparable to that of LocARNA alone.
Patient specific cutting blocks (PSCB) seem to have the potential to improve component alignment compared to the conventional technique and to be comparable to CAS.
Note that the speed of KalignP for alignment alone is comparable to Kalign2.
Kalign2 (Lassmann et al., 2009) is one of the fastest MSA methods, and still the alignment accuracy is comparable to many of the slower methods.
Early versions of BSMAP are very slow although alignment accuracy is comparable to other tools (Chatterjee et al., 2012; Chen et al., 2010; Krueger et al., 2012).
A ratio of 212 DMPC molecules per cytochrome b5 is necessary to reach a quality of alignment that is comparable to pure DMPC/DHPC bicelle samples (see Figure 6D).
On a dataset like RV11, the improvement is much less marked (M-Coffee8 delivered alignments having an average accuracy of 37.5%) and one needs to restrict the combination to the four best non-template-based methods in order to obtain alignments with accuracy comparable to the best methods (Table 1).
Note that the alignment to the draft genomes was performed using low-specificity alignment parameters and thus is not directly comparable to the alignments of the EST libraries.
Besides this, INDUS has binning accuracy and specificity comparable to alignment based approaches.
Write better and faster with AI suggestions while staying true to your unique style.
Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com