The phrase "alignment combination" is correct and usable in written English.
It can be used in contexts where different alignments or configurations are being discussed, such as in design, engineering, or data analysis.
Example: "The alignment combination of the gears is crucial for the machine's efficiency."
Alternatives: "alignment configuration" or "alignment setup".
There were 10 different alignment combinations for each gene, however an average value is reported in results.
Ks values were obtained for the 6 pairwise alignment combinations (Table 1).
The automatic alignment consists of a voting procedure, where each resource, be they static or dynamic, votes for different alignment combinations, in each sentence pair.
The neddle package of EMBOSS suite was used to make all possible pairwise alignment combinations between the full-size 14-spanner MFS-MDR proteins.
GASS includes the following three steps: ① Use BLAST to conduct the alignments from annotated species to an un-annotated genome; ② Search the optimal alignment combinations with the shortest path model; ③ Control the annotation quality, and build the annotation database.
Therefore, many computations can be omitted when performing protein database searches if the minimal difference of all alignment combinations can be known in advance, allowing us to omit the extremely different combinations and retain the possible combinations in order to perform the SW alignment.
If GASS cannot find the GT-AG donor and acceptor in the introns' boundary of one optimal alignment-combination, 10 bp two-side shifts are extended to search the canonical splice site.
For the selected optimal alignment-combinations, the following criteria were used to keep high-quality annotations: ① Checking for canonical GT-AG donor and acceptor splicing sites.
The scaffold consisted of longitudinally aligned poly(hydroxy butyrate-co-hydroxy valerate) (PHBV) and poly vinyl alcohol) (PVA) nanofibers (inner layer), radially aligned PHBV-elastin nanofibers (middle layer) to provide the bi-directional alignment and combination of longitudinally aligned PHBV-elastin and random PHBV/PVA multiscale fibers (peripheral layer).
FRUUT allows the user to select any alignment mode combination (rooted / unrooted, ordered / unordered, local / global) and to compute optimal pairwise alignments of RNA trees with an attached significance scoring model described in Section 'p-Value computation'.
