Sentence examples for alignment classes from inspiring English sources

In this subsection, we discuss which of the 5 alignment classes have the best DIALIGN score.

For the two most conserved alignment classes, we analyzed the persistence of the sequence similarity in more distantly related species.

And, indeed, we could relate distinct types of tree topologies to distinct alignment classes which were defined in terms of the relative position of the – A – S – B – motifs.

The DIALIGN alignment was also shown to be stable (see Fig. 7) whereas a variety of different alignment classes showed up in the CLUSTAL W alignments, one example being also shown in Fig. 7.

For the genome alignment classes, NM indicates reads that could not be mapped to the genome, R* reads that were mapped to repeat areas and U0-U2, reads that were mapped with either no, one or two mismatches to the genome.

To compute DIALIGN scores for all alignment classes, the xfr option described in 2 was used: We excluded the possibility of aligning the subwords S1 and B1 of S22 with subwords of any of the other sequences aligned with these subwords in the class-2 or class-4 alignments.

We performed two types of alignments, class 4 HDACs with HDACs of other classes and class 4 HDACs alone.

On the basis of sequence and structural alignments, class I cyts c have further been partitioned into 16 different subclasses.

Alignment between classes I and II reveals a dramatic loss of sequence information by class II during evolution.

Next, EST clusters representing individual pHap were identified by dividing the AW ESTs that remained in a BLAST alignment into classes where each contained ESTs with no sequence differences in their overlapping regions.

The structure of the resultant complex contains 8 amino acid residues that span the alignment of Class I as well as Class II JH agonists.