Sentence examples for alignment choices from inspiring English sources
Both of the latter two cases had multiple best hits but resulted in different alignment choices probably due to insert size statistics, in turn due to the particular input read batch.
To account for fragment sizing error, TWIN modifies the FM-Index backward search algorithm to backtrack along possible alignment choices that are consistent with the current fragment in the query.
Alignment of intron sequences, even within the apomict group, was not straightforward, with small changes in gap weight penalties or manual alignment choices influencing the location of indels and diversity statistics recovered.
> -wrap-foot> Figure 1 shows the influence of alignment choices and the exploitation of gene models on the number of genes for which transcript expression levels can be estimated reliably (with a relative error of 20% or less).
Different games may offer different alignment choices.
The joint estimation framework does not suffer from this sensitivity to alignment choice and allows alignment uncertainty to be estimated.
We note that including indel information in analyses exaggerates the bias that results from fixing a single alignment choice.
Any phylogenetic tree that we estimate is unlikely to be an exact representation of the true phylogeny, due to bias or uncertainties from several sources, such as data sampling, sequence alignment, choice of models of sequence evolution, low resolution such that many topologies appear similarly probable, homoplasy or artefacts such as long-branch attraction [ 1, 15, 16].
Many factors influence alignment generation, including homology prediction, transcript choice, aligner choice, and species usage.
The alignment of choice based on congruence optimization with unambiguously aligned data was that obtained implementing the Q-INS-i algorithm for all nuclear genes, except for the LSU-A fragment in the case of the ingroup dataset.
In addition to potential alignment errors, choice of consensus is a subjective human decision.
