Sentence examples for alignment can be a from inspiring English sources

Choosing a software tool for structural alignment can be a challenge due to the large variety of available packages that differ significantly in methodology and reliability.

The target of read alignment can be a whole genome or only the transcribed portion of the genome (transcriptome).

Alignment can be a sticky situation from time to time.

Under those circumstances, even a discrepancy caused by a single base in a single column of an alignment can be seen as a hint for a SNP site, i.e., if the base probability values of the bases in the immediate area are high and do not allow an alternative sequencing error hypothesis.

A structural motivation for making such an alignment can be obtained from a requirement of a weaker form of rotational symmetry at the group level.

The normalization factor Z is called the partition function of the alignment problem [ 14], and is defined as (2) Z = ∑ A ∈ A ∗ W A = ∑ A ∈ A ∗ e βS A. The probability P A of an alignment can be calculated by (3) P A = W A Z = e βS A Z. Let P(a i ∼ b j ) denote the posterior probability that residues a i and b j are aligned.

Our alignment can be represented as a vector a = { a1, a2,…, a L } where the elements of this vector are columns of our alignment.

A mono-domain with a homeotropic alignment can be induced by a thin film surface in the LC phase.

As proposed above, an alignment can be summarized as a sequence that represents the order of the different categories of polymorphic sites.

As shown in Figure 1, an alignment can be represented as a sequence of states drawn from M, I t and I s, and assigned a probability calculated by our CNF model.

Regions devoid of such breaks are called synteny blocks, and a genome alignment can be defined as a set of such blocks of homologous positions.