The phrase "alignment calculation" is correct and usable in written English.
It can be used in contexts related to mathematics, engineering, or data analysis where determining the alignment of elements is necessary.
Example: "The alignment calculation showed that the components were perfectly aligned, ensuring optimal performance."
Alternatives: "alignment assessment" or "alignment measurement".
If a new sequence is involved in the node and the sequence is not yet aligned in the previous steps, alignment calculation is performed.
For each node, If all the children of the node are in the existing alignment or already aligned to the existing alignment, then no alignment calculation is necessary.
The alignment-recycling heuristic produces results consistent with de novo alignment calculation, with better than 80% hit list overlap on average.
No lower limit is set for any E value during the alignment calculation and only the best results are shown.
The complete procedure of data acquisition, alignment calculation and tree reconstruction took less than one hour of computational time for the three class-specific trees and 3.5 h for the complete Chlorophyta tree on a conventional 2.0 GHz single core computer.
Integration of the positions of matched peaks or of already identified compounds as anchors speeds up alignment calculation, yet still provides enough flexibility for it.
We performed these alignment calculations in "sequence-dependent mode", wherein the LGA program calculates optimal superposition based on a fixed R-R correspondence, in this case corresponding to that obtained using LGA on the Cb setting (see Fig. 1).
Therefore, determining the correctness of the boundary conditions is one of the most important and difficult issue during the marine shaft line alignment calculations.
Because MotIV uses the STAMP source code, it provides a range of options for alignment calculations (see the documentation for the R package and/or STAMP).
This is also true of some of the multiple sequence alignment calculations.
AK performed secondary structure predictions, alignment calculations and phylogenetic reconstructions under supervision of MWo.
