Sentence examples for alignment by using from inspiring English sources

The codeml program of the PAML software package was used to detect positive selection in the CYP71C subfamily [ 39]. cDNA sequences were aligned based on protein alignment by using the RevTrans 1.4 server [ 40].

Sequences were aligned and phylogenetic trees were constructed from each gene alignment by using a neighbor-joining approach implemented in MEGA5 (www.megasoftware.net/) with 1,000 bootstrap replicates.

These aligners take advantage of the short read lengths for speeding up the alignment (by using hash tables for speeding up seed identification) which allows the processing of a larger number of reads in a reasonable time frame: Eland (Illumina): the mapping algorithm which is provided by Illumina as part of its analysis pipeline, divides each read into four parts (A, B, C and D).

For this, we design a new version of the suffix array of alignment by using an alignment transformation and a new definition of the alignment-suffix.

Conclusions: Frictional forces can be reduced during alignment by using self-ligating brackets, small dimensions, and less stiff wires, thereby inducing the wire to slide in the slots.

Three different charges i.e., GH, AM1BCC and MMFF94 were applied to the dataset and all three sets were subjected to the database alignment by using sybyl7.3 [16].

Ambiguously aligned codons were filtered out from the resulting 260 alignments by using Gblocks [ 76] with default parameters.

Sarhan and Hassan [4] analyzed available stopping sight distance (SSD) on horizontal curves with roadside or median barriers in 3 Dimension (3D) combined alignments by using finite element technique software.

I generated an initial set of position-specific scoring matrices (PSSMs) from the resulting sequence alignments by using the BLOCKS server (http://bioinfo.weizmann.ac.il/blocks; [16]).

We computationally test this hypothesis in comparative analyses of 16S and 23S rRNA sequence alignments by using a tensor decomposition, i.e., a framework for modeling composite data.

Protein-based alignments were converted to nucleotide alignments by using RevTrans [ 71].