Sentence examples for alignment built from inspiring English sources
The slippery concrete surfacing, steep left-side ramps, center breakdown lane, and wide-open alignment built for high speeds all contributed to a high number of crashes.
The current alignment, built in the mid-1980s as a mostly two-lane freeway, continues east across rugged terrain to the city of Grass Valley, where it joins SR 49 on the Golden Center Freeway.
In this area, known as the Five-Mile Grade, the four-lane Ridge Route Alternate became the northbound lanes of I-5, while the added four-lane alignment, built to the east (next to the old Ridge Route), had lower grades and became the southbound (downhill) lanes to cut down on runaway trucks.
We can consider the pairwise alignment built form A3 and A5 as a representative of their ancestral gene A35.
Corruption of the PSI-BLAST alignment built from hits to the α-helical bundle is evidenced by a profile-based similarity search (HHsearch), which finds the α/β P-loop hydrolase domain with probability 98%.
Following the identification of G. vaginalis virulence factors, all the members of their ortholog groups were extracted, an alignment built using Muscle with default settings [ 73], and a hidden Markov model (HMM) constructed using the hmmbuild command.
Progressive alignment builds up a final MSA by combining pairwise alignments beginning with the most similar pair and progressing to the most distantly related.
Therefore, to identify the human-specific changes we utilized the Ensembl Compara.6_primates_EPO six primates alignment, build 58.
Each iteration in the algorithm involves two steps: (i) Given the current alignment, build an optimal CM and (ii) given the current CM model, find the optimal multiple alignment between the sequences.
Covariation provides an independent method for verifying the quality of an alignment and should therefore be especially useful for verifying alignments built on sequence conservation alone.
Performance is also shown for alignments built using guide trees generated using our earlier SeedMap program.
