Sentence examples for alignment boundary from inspiring English sources

Alignment boundary correction is much more effective when applied to the highest scoring alignments.

Anomalous matrices can correct overextension because alignment boundary correction is robust to matrix selection.

To avoid HOEs, PSI-Search always uses the alignment boundary information from the first significant alignment in which a library sequence appears.

Each alignment boundary was measured and the results were divided into seven bins ranging from extremely incomplete (<−40 residues, i.e. >40 residues missing) to extremely overextended (>40 residues added; Fig. 2A).

To illustrate how 'correct' scoring matrices scoring matrices with target identities that match the evolutionary distance of the homologous domains improve accuracy, we examined alignment boundary changes with different scoring matrices.

Thus, if the first significant alignment with a library sequence aligns residues 25 125 at iteration i, later alignment boundaries at iteration i +1 and beyond are ignored; only the initially aligned region (25 125) is used to form the PSSM.

The list of all of the alignment boundaries is generated allowing a quantitative determination of the transcriptional status of any genomic segment at the base pair level.

The positional scores were quantified in the following manner: For each positive PSSM, the alignment boundaries were determined by the overlapping alignments obtained from either Adaptive GDDA-BLAST or rps-BLAST.

PSI-Search includes an optional alignment boundary-masking procedure that reduces HOE errors in the PSSM profile.

Different scoring matrices can produce different alignment boundaries.

In contrast, incomplete alignment boundaries are more common in low identity alignments, whereas overextended alignment boundaries are more common in high identity alignments.