Sentence examples for alignment based on their from inspiring English sources

We performed structural alignment based on their mature tRNA sequences (from which introns and leader sequences were deleted) by manually improving the multiple alignment data through complete matching of the consensus nucleotides conserved among archaeal tRNAs (see Methods for detail).

Katoh, K. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.

Katoh, K., Misawa, K., Kuma, K. & Miyata, T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.

Katoh, K., Misawa, K., Kuma, K. I. & Miyata, T. MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform.

Multiple subset alignments, to be used in comparative analyses, were extracted from the master alignments based on their metadata values, using the Antigenic Variability Analyzer (AVANA, http://avana.sourceforge.net), developed by the authors to support information-theoretical analysis tasks [17], [18].

Sites are sequentially stripped from the alignments based on their rate of evolution and phylogenies are created based on slower evolving sites.

The factor was adapted from a previous study (Mihalek et al., 2004) to give weight to the individual sub-alignments based on their location in the phylogenetic tree.

The corresponding nucleotide gene family datasets were aligning based on their protein alignments using in-house software.

The protein-coding DNA sequences were aligned based on their protein alignments at the web server http://www.bork.embl.de/pal2nal/[ 27].

Clumps could be packed into a desired geometry while dynamically modifying their alignment based on experimental data sets defining the atria's fibre orientations.

Tm-Align performs optimized residue to residue alignment based on structural similarity using dynamic programming iterations.