The phrase "alignment back to the" is correct and usable in written English.
It can be used when discussing the process of realigning or returning to a previous state or standard, often in a technical or organizational context.
Example: "We need to ensure alignment back to the original project goals to maintain our focus."
Alternatives: "realignment to the" or "returning to the".
The program phyloFit was applied to generate the tree and branch length, after adjusting the frequencies of the alignment back to a genome-wide GCpercentt of 0.41.
Some tools for color-space SNP calling first map the reads in color space by translating the reference, but then translate the multiple alignment back to nucleotide space in order to call SNPs (Li and Durbin, 2009; Li et al., 2008a).
Alignments were performed using the BioPerl library; for each gene, cDNAs from S. cerevisiae and a selected clade member were first translated into protein, followed by alignment using dynamic programming (with the BioPerl dpAlign function, default parameters), and then projection of protein sequence alignments back to DNA.
In this calculation, vertices in the structural alignment are converted back to the corresponding residues and each residue may be represented by more than one vertex.
This service also provides streaming of alignment and annotation results back to the appropriate BRC so that users can view results in the relevant BRC, using annotations and tools provided in support of transcriptomic analysis.
We devised an algorithm, termed GATA, that first forms an assembly from reads partitioned into subsets by targeting arm sequence and then performs base quality– and coverage-informed genotyping by alignment of raw reads back to the assembled contigs.
After a second alignment of discordant chromPETs back to the human genome with more sensitive parameters, and excluding any "concordant" chromPET that map with the expected size and orientation, we processed all the resulting "discordant" chromPETs (including multiple mappings) using the HYDRA pipeline., Duplicate alignments were removed and then fed to the HYDRA pipeline with default parameters.
A natural accuracy measure is then the reverse engineering capabilities of the provided output alignments; intuitively an alignment mapping reactions that belong back to the same original KEGG pathway is considered to be of high quality.
Once finished, the extended sub-tree is put back to the alignment tree structure, the reference alignment is adjusted for insertions in the new sequences, and the process moves to the next node.
We have confidence in the KoRV sequences reported here since i) in some cases the sequences match exactly with previously published data; and ii) the assembly is supported by alignments of sequence reads back to the transcripts (analysis not shown).
