Sentence examples for alignment back to from inspiring English sources

The program phyloFit was applied to generate the tree and branch length, after adjusting the frequencies of the alignment back to a genome-wide GCpercentt of 0.41.

When we aligned the mRNA to both parent gene and putative retrocopy loci, we were able to map the location of the breaks in the alignment back to the mRNA coordinates.

Some tools for color-space SNP calling first map the reads in color space by translating the reference, but then translate the multiple alignment back to nucleotide space in order to call SNPs (Li and Durbin, 2009; Li et al., 2008a).

Alignments were performed using the BioPerl library; for each gene, cDNAs from S. cerevisiae and a selected clade member were first translated into protein, followed by alignment using dynamic programming (with the BioPerl dpAlign function, default parameters), and then projection of protein sequence alignments back to DNA.

There are three causes of failure of HTO in a varus knee: inability to correct the deformity during surgery, a "tibial teeter-totter effect" (advanced medial tibiofemoral OA and obliquity), and gradual collapse of the medial compartment over years, in which the overall alignment drifts back to varus because of continued medial tibiofemoral OA [28].

Plans for a major highway along a similar alignment date back to Gordon Stephenson and Alistair Hepburn's 1955 "Plan for the Metropolitan Region", which was the precursor of Perth's Metropolitan Region Scheme.

Protein sequences of orthologous gene pairs were aligned by CLUSTALW [ 43] and the protein alignments were converted back to DNA alignments using PAL2NAL [ 44].

The Ka/Ks Calculator Tool calculated the multiple sequence alignment and the phylogenetic tree from these input sequences, translated the DNA-sequences to protein, calculated the alignment, transformed it back to DNA, and aligned it on codon boundaries for Ka/Ks calculation.

This service translates nucleotide sequences, calculates multiple sequence alignment, transforms it back to DNA and the resulting alignment is used to construct phylogenetic tree using least squares distance method of Jukes and Cantor.

In this calculation, vertices in the structural alignment are converted back to the corresponding residues and each residue may be represented by more than one vertex.

The RevTrans 1.4 Server (http://www.cbs.dtu.dk/services/RevTrans/) was then used to translate the amino acid alignment back into the original DNA sequence [43].