The phrase "alignment back" is not correct and does not convey a clear meaning in written English.
It may be intended to refer to a concept related to alignment, but without additional context, it is unclear when it could be used.
Example: "We need to ensure the alignment back of the components before final assembly."
Alternatives: "realignment" or "repositioning".
The RevTrans 1.4 Server (http://www.cbs.dtu.dk/services/RevTrans/) was then used to translate the amino acid alignment back into the original DNA sequence [43].
The program phyloFit was applied to generate the tree and branch length, after adjusting the frequencies of the alignment back to a genome-wide GCpercentt of 0.41.
It is possible that other conditions such as abnormal spinal alignment, back muscle weakness, or inflexibility may have contributed to a reduced quality of life in these patients.
When we aligned the mRNA to both parent gene and putative retrocopy loci, we were able to map the location of the breaks in the alignment back to the mRNA coordinates.
Some tools for color-space SNP calling first map the reads in color space by translating the reference, but then translate the multiple alignment back to nucleotide space in order to call SNPs (Li and Durbin, 2009; Li et al., 2008a).
The equivalent nucleotide (nt) alignment "back-aligned" from the protein data was also prepared (see Additional file 6).
As things stand, President Obama can reorder the world's alignments back in the West's and America's favor and give his own tenure a vital boost by confronting Iran directly.
Alignments were performed using the BioPerl library; for each gene, cDNAs from S. cerevisiae and a selected clade member were first translated into protein, followed by alignment using dynamic programming (with the BioPerl dpAlign function, default parameters), and then projection of protein sequence alignments back to DNA.
In order to ensure proper alignment of the coding regions, the trees were based on DNA alignments back-aligned from the proteins' alignments.
For each species, the 80 protein-coding gene sequences were translated to amino acids, were aligned using MAFFT aligner tool [ 43] and finally, the respective nucleotide sequences were aligned back based on the translated amino acids' alignment using back-translator tool from TreeBeST (http://treesoft.sourceforge.net/treebest.shtml).shtml
The amino acid sequences for the 591 orthologs selected by the above procedure were then aligned with ClustalW ver. 1.83 [ 70] using default parameters and the resulting alignments back-translated into their DNA sequence, preserving patterns of indels from protein alignments.
