The phrase "alignment as many" is not correct and does not convey a clear meaning in written English.
It is unclear when this phrase could be used due to its lack of grammatical structure and clarity.
Example: "The alignment as many factors can lead to different outcomes." (This example is awkward and unclear.)
Alternatives: "alignment of many" or "alignment with many".
To enable correct alignment of as many reads as possible the raw reads were trimmed to 65 bp by removing 5 bp from the 5′-end and 30 bp from the 3′-end of each read and one mismatch per mapped read was allowed.
Our data show that currently claimed nucleotide sequences in US patents cover at least 41% of existing genes, as identified by BLAST alignment matches, and as many as 100% when allowing for 15mers.
Mean AOFAS score at baseline (preoperatively) was 40 (33–54) in the postfracture group and 31 (25 42) in the instability arthritis group, due to a difference in alignment subscore, as many instability ankles scored 0 points instead of 10 points.
These prove to be effective settings, as Y4 produces ~1.6× as many GE50U alignments per CPU second as the other YAHA runs, and ~2.5× as many as M. Given these results, we use 650 as the maxHits threshold for YAHA in the accuracy test below.
The PINALOG alignment has 3.5 times as many interlogs (NI) as IsoRank (460 versus136) while MI-GRAAL fails to find any.
Using the CQ method, a sequence is classified as Y-linked if it has more than 3.33 times as many alignments from male data than from female data, and therefore a CQ less than 0.3.
For example, human (Homo sapiens), being the most complete, has the largest number of alignments of the other vertebrate species, followed by pig (Sus scrofa), and while bison (Bison bison bison) and water buffalo (Bubalus bubalis) are more closely related to cattle than human or pig, these bovids have less sequence data available and thus do not produce as many alignments.
