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Figure 7 FFT analysis of HEK 293T alignment as a function of CNF positioning density.
Fig. 4 Measurements of the Mach-Zehnder interference fringes with the single photon detector for perfect alignment as a function of the position of the delay line with different resolutions.
Interestingly, plotting footprint alignment as a function of speed revealed a non-linear relationship in which the data points cluster into three groups.
Figure 3 B shows histograms of the eccentricity-weighted cell alignment as a function of cell alignment with respect to nanoridge direction for five different eccentricities.
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We also show that by counting the number of near optimal alignments as a function of the distance from the optimal score, we can select a good set of parameters that best constraints the biologically relevant alignments.
Figure 7A illustrates the behavior of the mean relative solvent accessibility in helix work positions within multiple alignments, as a function of the generalized topohydrophobic index y1, ranging from 0 to 1.
To test our ability to estimate protein substitution rates from sequence alignments as a function of indel to substitution ratio, we used indelible (Fletcher and Yang 2009) to simulate 100 amino acid proteins randomly generated from the amino acid frequencies found in yeast disordered regions under the WAG model with the default indel model.
Next, the alignments from rps-BLAST are filtered out, based on the thresholds of percentage identity and percentage coverage (i.e., the alignment length as a function of the profile length) in order to eliminate random alignments (Figure 1-iv).
We also investigated alignment accuracy as a function of sequence identity and demonstrated CMAPi's superior performance as sequence identity declines (Fig. 4) using complexes classified in SCOPPI database.
We observe strong fiber alignment and densification as a function of applied strain for both uncrosslinked and crosslinked collagenous networks.
Our analysis outlines the relationship between the mean number of non-trivial neighbors and a topohydrophobic index, which relies on the mean hydrophobicity of a position within a multiple alignment of sequences, as a function of the secondary structure.
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