Sentence examples for alignment arising from inspiring English sources

Putative 5.8S rRNA genes rarely showed any tags (possibly due to ambiguous read alignment arising from non-uniqueness among multiple 5.8S rRNA copies in the reference genome or to their small size).

The genome-based transcript sequences derived from human and chimpanzee for each putative orthologous pair were aligned using clustalw (version 1.81 [ 42]), with gap extension penalties set to zero to allow gaps in the alignment arising from sequences missing in the chimpanzee assembly.

A new alignment arises from aligning the reprojected reconstruction with the original projections, and this process is iterated until convergence is met.

Strain-induced alignment arises a priori from a combination of reversible elastic effects and irreversible inelastic effects.

An important example of the local RNA alignment problem in homology search and alignment arises in metagenomic shotgun survey sequencing (Chen and Pachter, 2005; Schloss and Handelsman, 2005), particularly when assembly is incomplete or not possible.

Estimating expression levels using 'gene models' to explain the observed read alignments arising from different spliceforms then allows the exploitation of non-unique reads, which make up 80% of all the mapped reads.

The pairwise alignments used to define segments in the anchor graph have already been filtered for orthology (using delta-filter as described in Section 2.1) but inconsistencies between pairwise alignments arising from repeats and duplications can produce paths in the alignment graph with multiple segments from the same genome.

One of the major limitations of multiple alignments arises from the heuristic methods used to calculate the multiple sequence alignment.

These spurious TIC alignments arose because they spanned a particular splice combination across two RefSeq transcripts for the same gene that was not represented by any single RefSeq transcript.

In contrast, the proposed feeding architecture is very easy to fabricate and it overcomes the alignment difficulties arising from the proximity and aperture coupled feeding structures.

The problem of alignment errors arises especially on large-scale phylogenies with many taxa that span a broad divergence range [10], where many homologies lie in the twilight-zone of sequence alignments [11].