Sentence examples for alignment approaches have from inspiring English sources

Recently, some new alignment approaches have been developed such as POA [ 5], MUSCLE [ 6] or PROBCONS [ 7].

The two alignment approaches had no effect on topology and limited effect on nodal support (fig. 7 and supplementary fig. S3 A, Supplementary Material online).

Specifically, a kernel target alignment approach has been considered as the fourth ranking method (it will be called KA for future references) [28].

The described alignment approach has been integrated into the TRACKER software system.

Indeed, every multi-alignment approach has to address two major problems: (a) a procedure has to be defined that, in principle, associates a score to every possible alignment of any given sequence set and (b) an optimization algorithm has to be designed that finds optimal (or near-optimal) alignments relative to that scoring procedure.

Therefore, alignment-free approaches have become popular in recent years.

Hitherto, alignment-based approaches have completely dominated work in this area, while other approaches, of which there are several (Davies et al., 2007), have been examined with much less thoroughness.

In addition, a number of newer alignment-based approaches have been proposed since MI-GRAAL, including GHOST (Patro and Kingsford, 2012), NETAL (Neyshabur et al., 2013) and MAGNA (Neyshabur et al., 2013).

Concatenated alignment or "supermatrix" approaches have been used to propose deep phylogenetic relationships for all three domains of life [ 6- 9].

The most commonly-used approach is bidirectional best hits (BRH) of BLAST alignment, with imposition of strict criteria on discriminating E-value over a given alignment length, but various more sophisticated approaches have also been developed [ 22].

Several other approaches have been proposed to improve the alignment within fingerprint-based fuzzy vaults [59 61].