The phrase "alignment approach using" is correct and usable in written English.
It can be used in contexts where you are discussing a method or strategy that involves aligning certain elements or factors, typically in academic or technical writing.
Example: "The alignment approach using machine learning algorithms has shown significant improvements in predictive accuracy."
Alternatives: "alignment strategy employing" or "alignment method utilizing".
Each random database was submitted to the same all-versus-all alignment approach used for the real data, and the distribution of alignment scores considered the mean ± SD.
As our analyses confirm the studies of other authors that branch support values for some clades are highly dependent on the alignment approach used, we conclude that more attention should be given to alignment construction in phylogenetic analyses in general.
The local alignment approach used to map 98% of the reads against the WGS data 'soft-trimmed' the read end, which leads to a high proportion of aligned reads by removing non-matching ends.
This assumes that frame shifts never happen, and statistical alignment approaches using codon models may be more robust to this assumption.
An uniform alignment step precedes it to maintain a common alignment approach B) Using target:miRNA binding thermodynamic, implemented through RNAhybrid, initial set of targets are generated.
As in the UCSC genome alignments, this approach uses a BLASTz search to first identify homologous regions before aligning conserved blocks, and was shown to be more effective than other alignment algorithms at aligning highly diverged sequence, such as may be found in non-coding regions in between-species comparisons [55].
In their "MotifMap" article [11], Xie et al. test this approach using a multiple alignment of 18 placental mammals and further improve it by considering the uncertainty of the motif occurrences when calculating the branch length.
A classical approach using multiple sequence alignment and maximum likelihood led to slightly better results than our multiple-pattern program.
We adapted this alignment strategy to our segment-based approach using an existing graph-theoretical optimization algorithm and combined it with our previous 'direct' greedy approach.
The best amino acid substitution model for each RNR protein alignment was selected with the Akaike Information Criterion AICC) approach using ProtTest v3.0 [ 102].
