Sentence examples for alignment applied from inspiring English sources

Alignment positions may be impossible to homologise unambiguously, but if several hypotheses about their homology result in the same groupings in a phylogenetic tree, these groups can be considered supported independently of a specific alignment applied.

On SketchDeck's side, the presentations are channeled first to a junior team of overseas designers who make more basic improvements, like adjusting the formatting or alignment, applying templates and more.

Homology assignment for the ribosomal data was carried out using (i) a 'progressive' alignment procedure as implemented in BlastAlign [43] for maximum likelihood (ML) searches using PHYML 2.4 [44], and (ii) a parsimony based sequence alignment applying the concept of dynamic homology [45], [46] in POY 3.0.11 [47], [47].

Three measures were computed: (i) alignment conservation annotation measures the number of conserved physicochemical properties for each column of the alignment applying the approach used in the AMAS method [ 27]; (ii) alignment quality annotation is a measure of the likelihood of observing mutations (if any) in a particular column of the alignment.

Smith-Waterman analysis of the 142 sequences used the high-performance Sencel Paralign application (http://www.sencel.com/) for local sequence alignments applied a calculated e-value of ≤10−2, equivalent to the value used successfully for the annotation of a complex marine microbial metatranscriptome [30].

In order to design and optimize these dual inhibitors, two types of 3D-quantitative strelationshipvity relationship (3D-QSAR) studies based on the ligand alignment and receptor alignment were applied using the comparative molecular field analysis (CoMFA) and comparative molecular similarity indices analysis (CoMSIA).

To isolate the effect of alignment we applied a linear SVM to the alignment model determined by the HMM.

Either a medial open-wedge technique inducing a normal and an excessive valgus alignment or a closed-wedge technique inducing a varus alignment were applied (Table 2).

We assumed a full optimization of model parameters in all the above analyses with the exception of calculation of 1000 distance matrices performed in Tree-Puzzle based on bootstrapped alignments when the parameters estimated for the real alignment were applied.

For both datasets, proper alignment is applied to the images based on standard face landmarks.

Proper alignment is applied to the images based on the standard face landmarks.