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Structural alignment and visualization were performed using visual molecular dynamics [ 26].
The BioCreative metaserver constituted a pioneering work in the integration, alignment and visualization of multiple automated predictions, including the annotation of gene/protein mentions and handling their character overlaps [49].
The MAUVE alignment tool was used for multiple genomes sequence alignment and visualization.
After alignment and visualization of the conserved region, primer pair PFPRIM-F3 and PFPRIM-R4 was selected and used (Table 1).
As the authors claim, a Cytoscape app for the alignment and visualization of PPI networks may serve as a useful tool for researchers working with multiple PPI networks.
While it is clear that metabolic profiling would benefit from more extensive use of 2D NMR spectra, preprocessing methods such as signal alignment and visualization tools for multiple 2D spectra have lagged behind similar methods for 1D spectra.
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CSB conservation was depicted using Weblogo [ 38], and spectrograms were constructed using CLUSTALX (alignments), BioEdit (alignment editing and visualization), and Adobe Photoshop (building composites of BioEdit screenshots for spectrograms).
We introduce NGSView (Next Generation Sequence View), an open source alignment editor and visualization tool, designed to address the issues mentioned above.
The tef genome and the genes predicted in the genome from the Maker genome annotation pipeline combiner [ 41, 42] were uploaded to CoGe [ 43], a platform containing a wealth of genomes and providing interfaces to numerous tools for genome alignment, comparison, and visualization.
The alignments and visualizations were performed with the Symap software [ 31, 32].
We therefore present a potential supportive tool for PCa diagnostics since this allows for automated alignment and fast visualization of areas of interest on differently stained sections.
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