Sentence examples for alignment and selection from inspiring English sources

PCR primers specific for the chiA gene were designed by alignment and selection of highly conserved regions of chiA sequences from Serratia marcescens, Alteromonas sp., Bacillus circulans and Aeromonas caviae.

By alignment and selection of the highly conserved regions of the homologous sequences, two pairs of primers were designed to amplify the open reading frame (ORF) of the chitinase from strain C4 by nested PCR.

The challenges associated with steps along the modeling workflow will be discussed: the use of experimental anchors to steer the modeling procedure, amino acid sequence alignment and template selection, receptor structure refinement, loop modeling, ligand-binding mode prediction, and virtual screening for novel ligands.

This article presents a novel context-specific alignment potential for protein threading, including both alignment and template selection.

Results: We present a novel context-specific alignment potential for protein threading, including alignment and template selection.

The production of a multiple-sequence alignment and template selection for homology modeling were conducted as previously described by us, so here we give a brief account.

The model quality of TBM depends on sequence-template alignment and template selection, both of which are challenging when only distantly related templates are available for a protein sequence under prediction.

Although the dataset presented in this study is limited to small number of genes, the methodology presented of using shared single copy genes for phylogenetics using sequences from public databases could be expanded to utilize all of the shared single copy nuclear genes with automation of the alignment and sequence selection methods.

Unlike previous work on vertebrates (Buschiazzo and Gemmell 2010), our data are not based on whole-genome alignments and subsequent selection of homologous regions to extract conserved SSRs.

NBL carried out the alignment construction, phylogenetic and selection analysis and participated in drafting the manuscript.

CS participated in the data acquisition and performed the sequence alignment, the phylogenetic and selection analysis and wrote the main draft of the manuscript.