The phrase "alignment and multiple" is not a complete or clear expression in written English.
It may be used in contexts discussing coordination or agreement among various elements, but it lacks specificity.
Example: "The alignment and multiple factors affecting the project's success need to be analyzed thoroughly."
Alternatives: "coordination and various" or "agreement and several".
Sequences were aligned using ClustalW [ 37]; settings for both pairwise alignment and multiple alignment: gap insertion penalty 10, gap extension penalty 0.1.
"Cohesion, separation, alignment, and multiple other forces are what generate the visual outcome".
Sequencing results were analyzed using Mutation Surveyor version 4.0.5 (Softgenetics, State College, Pennsylvania; http://www.softgenetics.com) for alignment and multiple comparisons.
We then created a pipeline named XSAnno, which generated a model of orthologs by combining whole genome alignment, local alignment and multiple filters to remove regions with difference in mappability (DIM) between species.
Pairwise alignments and multiple alignments of DNA sequences were performed with the default parameters.
Multiple locus analyses of amino acid and DNA alignments and multiple epoch integration.
The doping profile of the selectively patterned emitter has historically been obtained by using expensive photolithographic or screen printed alignment techniques and multiple high-temperature diffusion steps [7].
It integrates multiple alignment algorithms and multiple variant calling software tools and gives user the flexibility to choose their preferred aligners and variant callers, and enables generation of consensus calls from multiple calling algorithms to improve reliability.
Strategy 2 uses all available alignment information (pairwise and multiple alignments) whereas strategy 3 does not use any alignment information in the actual motif discovery process.
Basic local alignment search tool and multiple sequence alignment (MSA) tool were employed to search for related proteins.
For each pair of orthologs, a parallel tool, ParaAT (Parallel Alignment and back-Translation), was applied to perform protein-coding DNA alignments [ 66] and multiple alignments of protein sequences with ClustalW2 using the default parameters [ 67].
