Sentence examples for alignment and maximum from inspiring English sources

Gap-containing sites were removed from the alignment and Maximum Likelihood trees were inferred using ProML from the PHYLIP package (http://evolution.genetics.washington.edu/phylip.html) [78].

Sequence alignment and maximum likelihood estimates of gene trees were performed as described above.

A classical approach using multiple sequence alignment and maximum likelihood led to slightly better results than our multiple-pattern program.

Phylogenetic analysis of VSP genes from P15 and WB was conducted using protein sequence alignment and maximum likelihood.

It uses global sequence alignment and maximum likelihood to estimate the evolutionary distances between genes to detect orthologous genes.

On simulated protein families, kmacs even outperformed a classical approach to phylogeny reconstruction using multiple alignment and maximum likelihood.

This set was extended by six P. pacificus Diapausins and subsequently used for alignment and maximum-likelihood tree estimation.

To corroborate the Bayesian results [108], maximum likelihood analyses of the codon alignments and maximum parsimony and neighbour-joining analyses of the aa alignments with 1000 bootstrap replicates were conducted using PAUP 4.0b10 [109].

Alignment algorithms find optimum alignments and maximum alignment scores S of two or more sequences for a given scoring system.

This database contains families of homologous genes from complete genome sequences with associated sequence alignments and maximum likelihood phylogenetic trees.

Phylogenetic reconstruction was performed using Bayesian (Mr Bayes 3.1.2: 4 × mcmc chains, 1,000,00 generations, sample frequency 100, burnin 3500; [ 54], maximum parsimony and neighbour joining (PAUP 4.0b10: 1,000 bootstraps; [ 55]) analyses of the amino acid and codon alignments, and maximum likelihood analyses of the codon alignments as described by Finn & Kristoffersen [ 4].