Sentence examples for alignment and identifying from inspiring English sources

After presenting the problem of initial alignment and identifying the key issues – low accuracy and long convergence time, the paper introduces the two position method showing the improvement of performance but not on convergence time.

Two performance-critical steps are implemented in C: clustering the sequences in a family's alignment and identifying top hits to a gene given a family's alignment.

Mulan comparative analyses involved threaded block alignment and identified evolutionarily conserved sequences at default value (>70% identity and >100 bp).

We generated consensus sequences using ClustalW2 (http://www.ebi.ac.uk/Tools/msa/clustalw2/) alignment and identified the sequences using GenBank BLAST searches (www.ebi.ac.uk/Tools/clustalw2/).ac.uk/Tools/clustalw2/

These alignments allowed us to compare interfaces from proteins belonging to the same similarity group, since each interface residue could be mapped to the multiple alignment and identified with its alignment column number.

To perform alignment and identify whether the HREs are located within the paralogous genes, we created a position-specific scoring matrix (PSSM) to extract all HRE candidates from retrieved HIF target genes.

We used the NextGENeViewer to observe the Chinese Crested alignment and identified sequence variants by scanning through all 130 coding exons in the canine orthologs of the 13 genes associated with human NCL (Table  1).

In searching for a PTB-binding site in E-cad, we performed a multiple sequence alignment and identified a potential PTB-binding motif, NVYY, in the cytoplasmic domain of E-cad.

DGN participated in the collection of new carbamoyltransferase sequences and their manual alignment and identified which sequence of E. faecalis is the putrescine carbamoyltransferase. BL carried out the phylogenetic analyses, the gene context study and drafted the manuscript which was further improved (and approved) by all authors.

Availability: All code used for this pipeline is freely available at the Dendrome project website (http://dendrome.ucdavis.edu/adept2/resequencing.html) Contact: [email protected] Single nucleotide polymorphism (SNP) detection involves looking across multiple sequence alignments and identifying base discrepancies.

We aligned reads to the captured mitochondrial consensus, parsed the alignments and identified the mismatches.