The phrase "alignment and genome" is correct and usable in written English.
It can be used in contexts related to genetics, bioinformatics, or evolutionary biology, particularly when discussing the alignment of genetic sequences or genomes.
Example: "The study focused on the alignment and genome of various species to understand their evolutionary relationships."
Alternatives: "sequence alignment and genome" or "genomic alignment and sequences".
Genomic Short-read Nucleotide Alignment Program (GSNAP) was used for alignment and genome construction, and Cufflinks to determine if differential expression and changes in transcript abundance were statistically significant [ 21, 22].
This was carried out with the construction of a RNAseq analysis pipeline comprised of GSNAP for alignment and genome construction, and Cufflinks to determine if differential expression and changes in transcript abundance were statistically significant.
The acid sugar library, circular dichroism data, structural data, sequence alignments, and genome contexts.
RHO perceived the study, performed genome alignments and genome alignment analyses, and re-sequencing of selected polymorphic sites; he drafted the manuscript.
In a section on genomic visualization, we follow the same approach by distinguishing between tools designed for genome browsing and visualization, genome assembly, genome alignments and genome comparisons.
Besides maintaining the comprehensive dataset, dictyBase also provides several tools, including a Genome Browser to display information graphically such as genes, RNA-seq, Dicty alignments, and genome assembly information.
The Geneious DNA sequence analysis software (version 5.4, Geneious) was used to generate multiple alignments and genome figures that were further processed using the GIMP2 programme (available at www.gimp.org).
The phylogenetic tree was constructed using dnaml from the PHYLIP package [ 44] based on SNPs from the whole-genome alignment, and the genome of Acinetobacter sp. ADP1 was used as the outgroup.
On top, alignment coordinates and genome coordinates of the reference genome (mm9 in this case) are shown.
Figure 3 shows an alignment and UCSC genome browser shot of this element.
Furthermore, multi-locus sequence alignment and whole genome comparison revealed the taxonomic position of the WCS model strains within the Pseudomonas genus.
