The phrase "alignment and gene" is correct and usable in written English.
It can be used in contexts related to genetics, biology, or bioinformatics, particularly when discussing the alignment of genetic sequences or genes.
Example: "The study focused on the alignment and gene expression patterns in various species to understand evolutionary relationships."
Alternatives: "gene alignment" or "alignment of genes".
The normal samples within E-MTAB-513 & GSE52194 have been downloaded as raw sequence data (.fastq files) and processed using STAR aligner [ 22] and htseq-count [ 23] (see alignment and gene expression quantification section).
Quality control, sequence alignment and gene expression counts were obtained using MAP-R seq workflow [28].
Several groups showed that the proliferation, migration, alignment and gene expression of cells were affected by the alignment and the dimension of nanofibers in contact with cells (Figure 2 (A-H)).
For this reason, we used only one Mcap-SCRiP sequence (Mcap-SCRiP1) for multiple sequence alignment and gene tree construction.
HMM has been introduced to computational biology for sequence alignment and gene detection [31] [33], as well as identifying TFBSs [13], [15] and NFRs [5].
Sequence common to the GAS genomes constituting the endogenous metagenome core, were identified by a combination of genomic alignment and gene content comparisons.
Protein sequence alignment, alignment trimming, and gene tree building were repeated for remaining sequences for each tree.
Overall, the improvements in read alignment and gene-level abundance estimation are more modest in the DO sample relative to the CAST sample.
Comparisons were also performed between MFL contigs and the M. hyorhinis genome (Additional file 7A-B); however, in this case, both the global alignment and gene-by-gene alignment were not applicable, possibly due to the large number of transpositions and inversions that have occurred in these genomes.
It is well-annotated and allows custom input from the user's alignments and gene trees.
All the alignments and gene trees are publicly available in phylomeDB (http://www.phylomedb.org, [ 26]).
