The phrase "alignment and for" is not correct and does not form a coherent expression in written English.
It appears to be an incomplete phrase and lacks context to determine its intended meaning or usage.
Example: "The alignment and for the project need to be discussed further."
Alternatives: "alignment and purpose" or "alignment and objectives".
Any scores can be stated for the alignment and for each single aligned sequence.
Importantly, however, tax-specific premiums disappear for loans with large number of co-leads, which facilitate credit risk diversification, for loans with performance pricing provisions, which facilitate borrower-lender incentive alignment, and for borrowers with CDS contracts, which facilitate credit risk transfer.
However, these algorithms were developed for primer design without considering the situations in multi-sequence alignment, and for the circular sequences like the mt genome.
We need to correct both for variation in coverage across the alignment and for sequencing errors.
If needed, this fixator also allows for adjustment of the alignment and for compression/distraction both during and after surgery.
Log likelihood values reported by PhyML were collected for each original alignment and for its two halves.
Phylogenetic analyses were carried out with the "Phylogeny.fr" web server (http://www.phylogeny.fr), using Muscle for multiple alignment and GBlocks for alignment curation, and constructing the phylogenetic trees with PhyML [84], [85].
The evolutionary history was inferred by maximum likelihood criterion using PAUP* v.4.0b10 for the nucleotide alignment and PHYML for the protein alignment [69], [70].
Mean coverage was 1236.4× for CYP2D6 (single best hit alignment), 785.5× for HLA-A (multi-hit alignment) and 1416.3× for HLA-B (multi-hit alignment).
We used the Tophat [ 21] version 2.0.4 and Cufflinks [ 22] version 2.0.2 software tools for sequence alignments and for quantifying gene expression levels.
The latest version of ClustalX [ 148] was used for multiple sequence alignments and for the generation of Neighbor Joining (NJ-) trees (bootstrapped and corrected for multiple substitutions).
