Sentence examples for alignment and also in from inspiring English sources

To this purpose, TUIUIU was applied as a preprocessing step of a multiple alignment application, leading to an overall execution time (filter plus alignment) on average 63 and at best 530 times smaller than before (direct alignment) and also, in some cases, to a qualitative improvement of the alignment obtained.

It also annotates the putative active site residues in the query sequence by highlighting them in the alignment and also displaying them in tabular form (panel 2 in Figure 4).

InSites calculates total private sites found in an alignment, and also counts the types of changes observed (i.e., if at a given site, the consensus state is A and one sequence has a G at that site, the tally is increased for "A to G" type private mutations).

Next, we have counted all positions with exact sequence structure matchings in these alignments and also determined the intersections with LCS-EPM.

Furthermore, the identification of such regions can aid both structure determination and sequence alignment, and may also aid in drug design.

Here, tetrapod exons 17 to 21V22 align with the teleost repeats such that the sequence alignment results also in an alignment of the secondary structure elements, i.e., the beta strands.

Firstly, a motorised x,y,z sample mount capable of holding an APD cryostat has been developed; this device is useful not only for initial sample alignment, but also in mapping a sample for the location of single crystallites.

The multiple sequence alignments were performed with the ClustalW multiple alignment application also in BioEdit version 7.1.3.

SHRiMP and SHRiMP2 are parallel alignment tools, available also in a distributed version [ 16], implemented upon the MapReduce programming model [ 17].

When reexamining the published sequences from McGrath et al.[ 23] and Destables et al.[ 55] we noticed that when using this strict criterion of requiring an alignment until the end of the C-terminus of a known protein and only considering as potential stop codon the first codon 3' of the protein alignment, also in these sets TAA was the only stop codon that could confidently be assigned.

However, the fact that we recently discovered a phylogenetic pattern similar to that from the first part of the XY1 alignment also in the RPD2b gene (unpublished data) can be interpreted as support for the hybridization/introgression hypothesis.