Sentence examples for alignment anchors from inspiring English sources

The first stage of MUMmer alignment involves identifying alignment anchors.

Segments of DNA between high-scoring alignment anchors can be unrelated, especially in bacteria.

Our method computes alignment anchors progressively according to a guide tree computed as follows.

MUMmer then aggregates local alignment anchors into one or more groups that cover collinear regions of the two genomes.

The first is a novel objective function, called a sum-of-pairs breakpoint score, to score possible configurations of alignment anchors across multiple genomes.

Alignment anchors are local alignments of highly identical sequence that by virtue of their high identity, can be easily found algorithmically, and are presumed to be part of the true alignment.

The liquid crystalline mesogens are known to adopt perpendicular alignment (anchoring) at liquid/silica interfaces, which after carbonization lead to a high concentration of graphene edge sites at the inner surfaces.

Key features of the approach are an anchor scoring function that penalizes alignment anchoring in repetitive regions of the genome and penalizes genomic rearrangement.

The protein sequences of human DUBs were obtained from the National Library of Medicine and the core domains were aligned with the CLUSTALW algorithm (EBI server) [65] and manually edited with Genedoc (http://www.psc.edu/biomed/genedoc/) by K.B. Nicholas & HB Nicholas Jr., using the putative active-site cysteine as an alignment anchor.

Local-alignment anchors were detected using PatternHunter (1e-10) [ 41].

Effectively, TRACKER thus computes alignments anchored at the genes from BLASTZ fragments.