The phrase "alignment analyze" is not correct in standard written English.
It seems to be a combination of two words that do not form a coherent expression. An example of a correct usage might be: "We need to conduct an alignment analysis to ensure all teams are on the same page."
Alternatives: "alignment assessment" or "alignment evaluation."
SYC collected the samples, carried out the molecular genetic studies, participated in the sequence alignment, analyzed the data, and wrote the manuscript.
DQH collected samples, carried out the molecular genetic studies, participated in the sequence alignment, analyzed the data, and wrote the manuscript.
In the case of the amino-acid alignment analyzed under JTT, stationary probabilities were set to empirical frequencies of amino acids measured over the whole data set (JTT + Γ4 + I + F, 21 degrees of freedom).
AW performed alignments, analyzed sequencing ratios, and revised the manuscript.
Structural alignments analyzing the protease core of CtpB were performed with the structure based algorithm cealign implemented in PYMOL (Schrodinger, 2010 ).
Compared to the independence models (such as the frequently used GTR + Γ + I model), the CP models performed better on average for all the alignments analyzed.
The first two alignments analyzed were a 153-position myoglobin alignment containing sequences from 42 tetrapods, and a randomized version of this alignment which was used as a negative control.
Multiple sequence alignments analyzed in this study were generated using MAFFT [ 70] using the E-INS_I version (optimal for sequences with conserved motifs and carrying multiple domains) with default parameters.
We used the resulting multi-species alignment to analyze whether any of the detected variation marks out any sequence element important for regulation by modulators or regulating factors.
The multiple alignments were analyzed for alignment depth.
