Sentence examples for alignment analysis was from inspiring English sources

Multiple alignment analysis was performed using Multalin (http://multalin.toulouse.inra.fr/).inra.fr/

Multiple sequence alignment analysis was performed using software CLUSTAL × 1.8.

Subsequently, multiple alignment analysis was performed with DNAMAN 6.0 software.

Similar nucmer alignment analysis was also carried out for the sequence generated for the same gene on the resequencing array platform and the reference sequence.

Multiple alignment analysis was performed with ClustalX.

Protein sequence alignment analysis was viewed through Jalview program [ 27].

The sequence databases used for alignment analysis were obtained from NCBI.

Local alignment analysis were also performed where segments of the sequence contigs were compared to the Optical map.

Homology and alignment analysis were conducted by using ClustalX version 1.8 (www.clustal.org/download/1.X/ftp-igbmc.u-strasbg.fr/pub/ClustalX) and MegAlign (DNASTAR, Madison, WI, USA).

These two topologies have approximately equal likelihood values in each of the totalml and concatenated alignment analyses, although the ML tree in concatenated alignment analysis is the second best tree in totalml analysis, and vice versa.

Post-alignment analysis was done using custom scripts written in Perl and R languages, in conjunction with local MySQL database server.