Sentence examples for alignment alignment from inspiring English sources

We designed our phylogenetic analyses to assess the effects of different strategies of sequence alignment, alignment masking, nucleotide coding, and model settings.

The original alignment (Alignment 1) with all 2,711 residues included (1,300 parsimony informative sites) was subject to gblocks 0.91b [66] processing to systematically remove ambiguously aligned positions.

The stringent alignment (Alignment 3) revealed a robust phylogenetic position (ML 99% bootstrap, BP 100% posterior probability and NJ 100% bootstrap) of the brain genotype as a sister group to the monophyletic clade of liver, Brazil-1 and Brazil-2 genotypes, together with M. melleni.

Protein sequence alignment, alignment trimming, and gene tree building were repeated for remaining sequences for each tree.

To address this problem, we have compared two methods designed to increase the accuracy of phylogenetic inference from a gappy alignment: alignment masking and alignment subdivision.

Tools such as Phylogenie (Frickey and Lupas, 2004) automatically identify orthologs of a starting sequence, via database searching, sequence alignment, alignment processing and tree reconstruction.

We then aligned nucleotide sequences concatenating triplets of nucleotides according to the multiple protein sequence alignment (alignments are available from the authors on request).

Two methods are implemented to estimate the equilibrium frequency vector π, one derived directly from the given alignment (Alignment-Based π or π AB ) and the other estimated by Maximum Likelihood (π ML ).

Z scores (see Methods) for two alignments, Alignment A of Fig. 3 and Alignment B proposed by Minor et al. [ 5], are given in Table 2.

With no a priori image pre-alignment, alignment-free cancelable fingerprint templates do not suffer from inaccurate singular point detection.

Among these alignments, alignments in class 3 look biologically most meaningful since it implies only one duplication event.