The phrase "alignment algorithms to" is correct and usable in written English.
It can be used in contexts related to computer science, data analysis, or any field where algorithms are applied for alignment purposes.
Example: "We need to develop alignment algorithms to improve the accuracy of our data processing."
Alternatives: "alignment methods for" or "alignment techniques to".
This allows binding sites to relocate within the regulatory sequence, making it difficult for alignment algorithms to correctly align them.
These warps often cause current alignment algorithms to converge slowly, find the wrong alignment, or even diverge.
While there are optimal alignment algorithms to compute pairwise homology, their deployment for large-scale is currently not feasible; instead, heuristic methods are used at the expense of quality.
However, the main objective of their work was to use sequence alignment algorithms to produce one robust (i.e., typo-free) lyric for a given song.
A reason for the absence of any evolutionary conserved interactions may also be based on limitations of sequence alignment algorithms to accurately detect homologies between eukaryotic and Plasmodium specific proteins.
We were unable to identify a common sequence motif using standard tools (e.g., MEME, [ 30]) and are currently attempting to combine structure alignment algorithms to this end.
Sigma uses a third-party short-read alignment algorithm to align all metagenomic reads onto every reference genome.
Despite that, our method (like many other genome aligners) applies a global alignment algorithm to all inter-anchor segments, navely assuming that homology exists.
Subsequently, these sequences were aligned using a global alignment algorithm to remove sequences for which the best blast hit represented only local homology.
For cruzain, PDB entries 1aim, 1me4 and 1me3 were aligned with falcipain 2 using Modeller's structure based alignment algorithm to serve as templates for the complex.
This method measures the correlations between RT and neuronal responses by using an alignment algorithm to find a temporal offset for each trial that would best align that trial's FR with the average over all the other trials.
