Sentence examples for alignment a sequence from inspiring English sources
A useful analogy may be a multiple sequence alignment: a sequence alignment aligns equivalent residues in different sequences and highlights regions with similar (conserved) residues, whereas the genome alignment in Figure 5 aligns equivalent genes in different genomes and highlights regions with similar (conserved) gene order.
To confirm homology between the procaryotic piwi mid domain and the Ago family of sequences and to establish an initial alignment, a sequence corresponding to the mid domain of the A. aeolicus Argonaute structure ([PDB: 1yvu], range 349 484) was used as a PSI-BLAST query (E-value cutoff 0.005, maximum 20 rounds, NR database).
Alignment of a sequence to gene regions with known transcripts also enabled the inference of sequence orientation.
The multiple sequence alignment highlights a sequence motif in the mid domain that binds the 5' phosphate of guide RNA.
Once the template is precisely mapped onto the sequence, its information content can be used to guide the sequence alignment in a sequence independent fashion.
They align a sequence to a multiple sequence alignment.
A Multiple Sequence Alignment (MSA) is a sequence alignment of three or more biological sequences, generally protein, DNA, or RNA.
Multiple sequence alignments (A) and sequence logo (C) of the known palindromes recognized by E. coli FadR.
Chen, Y., Chen, W., Cobb, M. H. & Zhao, Y. PTMap-a sequence alignment software for unrestricted, accurate, and full-spectrum identification of post-translational modification sites.
In order to minimize problem (3), we employed a sequence alignment based on structure rather than a sequence alignment based on sequence.
