The phrase "aligning structure" is correct and usable in written English.
It can be used in contexts where you are discussing the organization or arrangement of elements to achieve coherence or harmony.
Example: "The team is focused on aligning structure within the project to ensure all components work seamlessly together."
Alternatives: "synchronizing framework" or "coordinating arrangement".
Organization design is a systematic approach to aligning structures, processes, leadership, culture, people, practices, and metrics to enable organizations to achieve their mission and strategy.
As the reviews show, existing scoring functions do not generate consistent results, even when aligning structures that have only moderately diverged in evolution (Hasegawa and Holm, 2009; Kolodny et al., 2005; Slater et al., 2013).
Computational methods for aligning structural RNAs under a combined primary sequence and secondary structure scoring model have been developed (Backofen and Will, 2004; Sakakibara et al., 1994) including 'covariance model' (CM) [profile stochastic context-free grammar (SCFG)] methods (Durbin et al., 1998; Eddy, 2002; Eddy and Durbin, 1994; Nawrocki and Eddy, 2007).
To search for trnT genes we used WAR (webserver for aligning structural RNAs: http://genome.ku.dk/resources/war/, last accessed October 9, 2014) to produce an alignment of available trnT sequences from glaucophytes and green algae, annotated with the consensus secondary structure.
What this comes down to is a failure to fulfill one of the central tenets of architecture: aligning the structure, or form, of a space with its use, or function.
Stretching spider silk fibers has been shown to increase both stress and strain by aligning secondary structure.
Finally, we observe a relationship between structural complexity and consistency of alignments, suggesting that care is needed when aligning repetitive structures.
Flexible alignment is correctly seen as an important innovation in aligning protein structures, however our results demonstrate that it is not a panacea: introducing flexibility into alignments greatly enlarges the search space, exacerbating problems in generating high quality alignments for more distantly related proteins.
Crystal forms 1 and 2 contain two and four molecules per asymmetric unit, respectively, and aligning these structures reveals variations in the N- and C-terminal residues and in several loops, reflecting the inherent flexibility of these regions (Figure S2; Table S1).
