The phrase "aligning software" is correct and usable in written English.
It can be used when discussing the process of making software compatible or consistent with certain standards, requirements, or other software.
Example: "The team is focused on aligning software to ensure seamless integration with existing systems."
Alternatives: "synchronizing software" or "coordinating software".
The 49 bp sequenced reads were aligned to the pig reference genome using the aligning software Mapping and Assembly with Qualities (MAQ), which allowed 2 bp mismatches.
The last two represent the most popular aligning software packages currently.
A number of aligning software is available, such as Maq, RMAP, Cloudburst, SOAP, SHRiMP, BWA and Bowtie [ 106].
Conserved protein regions for primer design were identified by aligning POR proteins from diverse algal taxa with the MUSCLE sequence alignment software (Edgar 2004).
The sequence reads were aligned to the 3D7 reference genome (PlasmoDB version 7.1) using TopHat, a Bowtie-based software capable of aligning split reads [ 21].
We combine hardware automation involving a robot sample exchange system (Fig. 1a) and software automation for aligning, reconstructing, and analyzing to radically reduce the time investment for performing such a study [ 11].
During the assembly process, sequencing errors can be fixed by aligning different traces, but the software can also reduce polymorphisms and misplace those trace sequences because of the repeats.
Details of the sequence homologues found are provided in Additional file 6. Consensus zebra finch chicken sequences were created by aligning homologous sequences using MEGA3 software [ 44] and replacing mismatching bases and gaps with the code "n" to represent an unknown base.
Currently, these special alignments to ME reference sequences can be produced by the MOSAIK mapping software during its primary aligning process (a specific command line argument has to be given to MOSAIK) [ 33] (version 2.0 or above).
The corresponding nucleotide gene family datasets were aligning based on their protein alignments using in-house software.
All primer sequences were then aligned to the maize B73 reference genome using Bowtie software, an ultrafast and memory efficient tool for aligning short DNA sequences to large sequence databases [ 31].
