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The T1-weighted whole-brain structural image was aligned to the functional data and then transformed into Talairach and brainstem-normalized space (Napadow, Dhond, Kennedy, Hui, & Makris, 2006).
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As opposed to such vague possible actions of the different colloids, the changes in pH of the final perfusate mixtures are closely aligned to the observed functional changes on rate-pressure product (cf. Table 2 and Figure 4).
Total genomic reads were aligned to the KEGG genes databasefor functional analysis.
Functional volumes for each subject were aligned to the anatomical volumes, thereby transforming the functional data into a common brain space across participants.
Next, functional images were aligned to the subject's anatomical brain images using FLIRT (FSL) with 7 degrees of freedom (alignment across 3 translations, 3 rotations, and 1 global scaling factor).
Functional images were aligned to the anatomical images using the align_epi_anat.py script in AFNI (Saad et al. 2009).
The functional data were then spatially aligned to the volume acquired closest to each subject's anatomical image.
After the individual functional datasets were all aligned to the same stereotactic reference space, a group analysis was performed.
Functional thrust, which is aligned to the forward flight direction, lies in the same plane as the axial and normal forces, but differs from both force components.
In a subsequent step, the T2*-weighted functional dataset was then aligned to the inplane.
Functional and FA volumes were aligned to the 3D structural image for each participant that was created by averaging the two MPRAGE scans after correcting for motion.
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