Sentence examples for aligned the assembly from inspiring English sources

We also aligned the assembly against 820 EST sequences derived from a male of another strain of D. albomicans [ 9], and 88.5% of ESTs aligned to the genome assembly with an overall identity of 98.8%.

Mark Drakeford says he seeks to align the assembly with something all parties can agree, "that quality local public services are key to the prosperity and wellbeing of our nation".

In this study, comparison of genome content of these two isolates was performed by aligning the assembly contigs to the 70 15 reference sequences, from which 1.75 MB unaligned contigs from FJ81278 and 0.83 MB from HN19311 isolate were identified.

We used NUCmer, a variant of the MUMmer program [15], to align the assemblies of the BAC GQQD to the finished sequence.

We confirmed the origin of the ESTs by aligning the assemblies to a draft P. ultimum BR144 genome sequence [ 27].

To assemble transcripts for use in annotation, RNA-Seq reads were aligned to the assembly with Blat, and then assembled using Inchworm [ 95] in the genome-guided mode.

After assembly, we aligned the reads to the assembled contig and got the ratio of reads assembled.

For instance, it is standard procedure (e.g. the orangutan genome project, Locke et al., 2011) to use whole genome alignments to build super scaffolds by aligning the new assembly to the high quality genome of closely related species.

Protein sequences were aligned to the assembly using GenBlastA (version 1.0.4 70.

Paired-end reads from Illumina platform were aligned to the assembly using bwa22 mem, followed with duplication removal using Picard tools23.

In addition, if only one of the paired end sequences were aligned to the assembly, the BES placement was defined to be an orphan placement.