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Our approaches are based on the ability of one domain of the molecule to self-align in a magnetic field, or to dominate the overall orientation of the molecule, so that the conformational freedom of other domains can be assessed by their degree of alignment induced by the aligned part.
Therefore, we sought to confirm the topological model for the most poorly aligned part of FIT1.
ACOP and BCK carried out laboratory experiments and aligned part of the sequences.
Thus, the aligned part of a split read may be quite short [e.g. 20 nucleotides (nt)].
Similarity of two motif profiles is determined by the ALLR scores of each pair of motif profiles and the length of the aligned part of the two motifs.
The visualization shows the aligned part of the two networks, overlaying nodes and links using red color for the query and grey for the target network.
Similar(48)
As the 454 reads were shorter and the E-value of an alignment is directly proportional to the product of the lengths of the two aligned parts, we used for 454 read alignments an E-value cutoff of 10-7.
They direct parts initially at random orientations to a feed track and sends out the aligned parts one by one.
Ambiguously aligned parts of the sequences were excluded using Gblocks [ 39].
The output was manually inspected, and ambiguously aligned parts were excluded.
Protein evolution and protein classification are usually inferred by comparing protein cores in their conserved aligned parts.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com