Sentence examples for aligned output from inspiring English sources

In the final step, all aligned output files are merged per individual and are ready for downstream analyses.

For pile-up representation of reads in Figure  4, Bowtie aligned output reads were converted to bam format, sorted, and indexed using the SAM tools [ 41].

The second step involves aligning the query sequence with the identified subset of database sequences, analysing the aligned output, and finally assigning the query sequence to an appropriate taxon based on this analysis.

Variant calling from the aligned output for the individual exomes was then performed using SAMtools [ 23] to manipulate alignments in SAM format and call substitutions as well as insertions and deletions (INDELs).

The Buffer gate does not change the logic relationship between the input and output, but instead acts as an isolator and enhancer that can transform the input signal to a higher amplitude signal to match the input requirement of the aligned output modules.

The aligned fasta output was converted to the Stockholm format, and the HMMgluT was built from the resultant output.sto file using the "hmmbuild" command from HMMER v3.0 [ 50]. A. niger MstA was excluded from the multiple alignment.

We call these aligned segments output from CHAOS conserved segments.

All aligned Bowtie output files were merged per individual and were imported into the Stacks pipeline.

Quantification of mapped reads in the aligned SAM output files was performed using featureCounts, part of the Subread package (Liao et al., 2013, 2014).

Amplats plans to reduce production to between 2.1-2.3 2.1-2.3 ounces per annumillionouncesosely align outper with expected demannum

Some aligners are designed especially for aligning the output of Illumina's Sequence Analyzer.