This research contributes in that models of time, cost, and resources are aligned; interactions are formalized via the common variable time; and the possibility of higher order models is discussed.
In contrast, the semantic similarities of the aligned interactions reach their maximum when using topological information only (α = 0).
This study aligned the interactions between the N dynamics with soil microclimatic factors such as temperature, water pH and moisture across the 90 cm profile.
We and others have previously proposed homology models of A3G in which the N- and C-terminal CDA domains are aligned via interactions involving β2 to form a continuous β-sheet as observed in the crystal structure of the closely related A2 protein [12], [16], [35].
Motivation: Aligning protein protein interaction (PPI) networks of different species has drawn a considerable interest recently.
For each pair (A i, B i) of query domain instances that meets the stringent alignment threshold to a template interacting domain instance pair (A, B), we infer the interaction interface residues in (A i, B i) as the residues that are aligned to the interaction interface residues in (A, B).
The obtained M ˜ k l has z-axis aligned with the interaction direction, and the M2L kernel can be performed via F ˜ n m ( z B ) = ∑ k = | m | p − n ( − 1 ) m M ˜ k m ( z A ) ( n + k ) ! r n + k + 1. (66).
We know from the theory of Ising models that it is energetically favorable for neighbouring spins to be aligned when the interaction constant is positive and to be antialigned when it is negative.
