Sentence examples for aligned identically from inspiring English sources
It is calculated as the ratio of the sum of scores p for all pairs of residues in every column of the alignment by the sum of scores in the reference alignment; p?=?1 if the pair of compared residues is aligned identically in the reference alignment, otherwise p?=?0.
The TC score is calculated considering the ratio of the sum of scores c by the number of columns in the alignment, being c?=?1 if all residues in the column are aligned identically in the reference alignment, otherwise c?=?0 [ 20].
The three alignments were compared using SOAP [74], and only positions that were aligned identically among them were included in phylogenetic analyses.
Any reads that failed to align to the reference genome or aligned identically to more than one position were ignored.
Protein sequences were identified and aligned identically for all four Symbiodinium clades.
We labelled as cross-platform "target matches", sets where the oligonucleotide sequence of a probe aligned identically to the sequence spanned by all probes of an Affymetrix probe set.
For example, transcript I aligns identically to the EST predicted gene structure.
The agreement of a given alignment, S, with the reference alignment, R, is defined as the percentage of the residue pairs in the alignment which are identically aligned as in the reference alignment (I S ) relative to the reference alignment's length (L R ), i.e., A S, R) = (I S / L R ) × 100.
The large number of positions not identically aligned between the three alignments made us confident that the alignment space investigated was not too narrow.
I0 is the number of identically aligned residues in the reference and the method alignments; I1 is I0 plus the number of aligned residues that are shifted by one position, and so on.
Considerable parts of the ITS were not identically aligned between these three approaches, including a very long alignment-ambiguous part of the ITS1 and two shorter alignment-ambiguous parts of the ITS2.
