Sentence examples for aligned data and from inspiring English sources

The input is composed of allelic counts from aligned data and the output of inference is the predicted genotypes.

The mitogenome aligned data and four single genes (nad2, CR, cytb and rrnS) obtained from GenBank (Additional file 3) were used to calculate the genetic distances.

We sequenced the genomes of diagnostic and remission samples from these patients to an average depth of 31× high quality aligned data and the transcriptomes from the diagnostic samples (Supp. Table S5).

The difference of the number of reads uniquely mapped to the whole genome (paired t-test p-value: 0.14) and the specificities for each experiment (paired t-test p-value: 0.13) were not significant between the BFAST aligned data and MAQ aligned data (Additional file 3).

Here, our main strategy was to use the previous study of Pyron and Wiens [ 10] as a convenient source of aligned data and as a guide as to the taxonomic content of a major clade that background knowledge suggested included Ericabatrachus.

Phylogenetic trees were obtained based on analysis of the aligned data set and subsets thereof with NJ and Bayesian algorithms.

Of the 658 nucleotide sites in the aligned data matrix and included in the phylogenetic analysis, 115 were variable and 105 were parsimony informative.

Students then extract historical information from their aligned data matrices and use it to estimate relationships among the species from which the sequences were sampled.

The aligned data matrix and accession details are available from the authors on request.

Phylogenetic analysis was performed on the aligned data set and a rooted tree was constructed in MEGA v2.1 using the distance-based neighbor-joining method with the PCV type 1 sequence as an out-group (GenBank number AY184287) and the PCV2 sequences available from GenBank for genealogical analysis.

Therefore, to estimate the relative frequency of smaller indels (<100 bp) in each species, we restricted our focus to the subset of events that are unique to a single species within the aligned data set and show no overlap with structural variants in the other four species.