The phrase "aligned alternative" is correct and usable in written English.
It can be used when discussing options or choices that are in agreement or harmony with a particular goal or standard.
Example: "We need to find an aligned alternative that meets our sustainability goals while also being cost-effective."
Alternatives: "coherent option" or "compatible choice".
ClinSeK contrasts reads that are preferentially (as judged by alignment score) aligned to alternative alleles that contain breakpoints to ones preferentially aligned to wild-type references, similar to methods that quantify differential expression across different isoforms or genes [ 17].
The number of reads aligned to alternative fusion breakpoint assembly is contrasted with the number of reads aligned to the reference sequence around the breakpoint.
In addition to the eight unique sense tags that matched the full-length MaSp1 gene, there were five other unique sense tags that aligned to alternative MaSp1 sequences.
By default, qAlign uses bowtie to align single or paired-end reads to a reference genome, and unmapped reads are optionally further aligned to alternative references, for example to quantify the level of vector contamination.
In such unconstrained (unchained) condition the pairwise alignment cannot perform correctly (in fact only about half of the total RI pairs were correctly aligned along the alternative paths) while the multi-view alignment still performs correctly.
Although all of the Museum is aligned on these alternative axes, portions of the exhibitions pavilion and the east pavilion are aligned on the true north-south axis as a reminder that both grids are present in the campus.
We performed this procedure for sequences of 8 ENU-mutated lines of C3HeB/FeJ mice aligned to the alternative reference assembly for C3H/HeJ and annotated by exon lift-over from mm9.
If a read did not align to the genome or a known splice, but aligned to an alternative splice (thus skipping one or more exons in known isoforms, or else forming an inter-known-isoform splice) it was considered as a candidate alternative splicing event.
Specifically, whether people ascribed negative or positive consequences to energy alternatives aligned with their value-based attitudes toward these alternatives.
Every read, upon anchoring through a seed sequence, is aligned to both the alternative sequence and its corresponding reference sequences(s).
