The sequences are then aligned in the order defined by the guide tree.
SNP markers are aligned in the order defined by the cowpea consensus genetic map.
Finally, the eggplant super-scaffolds were re-aligned in the order of the deduced eggplant genome organization.
Circadian rhythms in the brightest 200 grids were aligned in the order of expression intensity in a heat map.
After the guiding tree is completed, the input sequences can be pair-wise aligned following the order specified in the tree (step iii).
Then, the 9,489 super-scaffolds were re-aligned in the order of the eggplant genome based on map position data of the 'marker-tagged' super-scaffolds.
Additionally, it also prioritizes search results to return first those citations with matching keywords aligned to the order as they occur in original queries.
The most optimal setup promises to be the enzyme channel (A) of Figure 6b in which the enzymes are co-localized (cf. Figure 2) and aligned in the order of the reactions.
While further and more comprehensive efforts should be made to fill the gaps to complete the eggplant genome sequencing, the dataset of 9,489 super-scaffolds aligned in the order of eggplant genome would be a helpful milestone for eggplant genomics in the future.
If you have the space, it helps to have a counter-like table, with everything aligned in the order you will use it in.
