Sentence examples for align the assembly from inspiring English sources

We first align the assembly contigs to the Velvet contigs using NUCmer [ 26].

The most common approach for comparing an assembly against a reference genome is to first align the assembly against the reference and then write in-house scripts to extract variants.

We used NUCmer, a variant of the MUMmer program [15], to align the assemblies of the BAC GQQD to the finished sequence.

We also aligned the assembly against 820 EST sequences derived from a male of another strain of D. albomicans [ 9], and 88.5% of ESTs aligned to the genome assembly with an overall identity of 98.8%.

In this study, comparison of genome content of these two isolates was performed by aligning the assembly contigs to the 70 15 reference sequences, from which 1.75 MB unaligned contigs from FJ81278 and 0.83 MB from HN19311 isolate were identified.

We confirmed the origin of the ESTs by aligning the assemblies to a draft P. ultimum BR144 genome sequence [ 27].

We compared the wMelPop-CLA and wMelPop-PGYP genomes by 1) aligning the assemblies to one another and identifying mismatches, 2) mapping the reads of each strain against the assembly of the other strain, and 3) mapping reads of both strains to the wMel genome, then calling and comparing variants.

To assemble transcripts for use in annotation, RNA-Seq reads were aligned to the assembly with Blat, and then assembled using Inchworm [ 95] in the genome-guided mode.

> -wrap-foot> as a means to assess the quality of the assembled spruce genome, the sequences of several BACs from the same genotype were aligned against the assembly using BLAST (Altschul et al., 1990).

The presence of small discrete elements, which must be accurately mounted and aligned, makes the assembly difficult and cumbersome.

Heterozygosity: Reads were aligned with the assembly and samtools [ 69] and awk were used to extract polymorphic positions.