These motions are attributable to the local interactions of specific active site residues with the nucleotide, the tight couplings between the apical and intermediate domains within the subunit, and the aligned interactions between two subunits across the rings.
This study aligned the interactions between the N dynamics with soil microclimatic factors such as temperature, water pH and moisture across the 90 cm profile.
Here we present a method for aligning non-covalent interactions between different protein-protein interfaces.
The electrostatic interactions between aligned amide groups in an α-sheet (Armen et al., 2004a; Daggett, 2006) are expected to give rise to strong Fourier-transform infrared (FTIR) signals.
The linkers in these polymers are aligned coherently so that strong interactions between them can take place as revealed by a number of interesting photophysical properties.
This allows users to easily import data processed using existing tools, while also providing methods for directly manipulating aligned reads (e.g. merging interactions between predefined anchors, removing positional duplicates and determining thresholds for self-ligation events).
The scoring function is usually designed to favor the alignment of similar nodes, while simultaneously accounting for the number of conserved interactions between the pair of aligned nodes.
Exchange interactions between electrons or holes can therefore align or anti-align spins, whereas inter-nuclear exchange interactions are negligible in materials science.
In the current study, we used dorsal root ganglia as a model system to systematically investigate the interactions between neurites and uniaxially aligned nanofibers.
In an effort to obtain a clear picture about the interactions between neurites and uniaxially aligned nanofibers, DRG cultured on the nanofiber scaffolds were dehydrated and then imaged using an SEM.
In summary, we introduced an extension of the PET-fold algorithm for the identification of interactions between two sets of multiple aligned RNA sequences, which exploits compensating base changes while taking intra-molecular partial structures and interaction sites into account.
