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As for the covariance of distances obtained from OPAs, the main difficulty in computing them is that, since sequence pairs are aligned individually, they usually have inconsistencies in their inference of the homologous characters (or else, computing an MSA from pairwise alignments would be trivial).
Sequences of the mapped loci were aligned with published bovine genome maps to identify inconsistencies.
We excluded any build inconsistencies influencing this result by also re-aligning to additional available primate builds (CSAC 2.1.4/PanTrog4 and BGI CR_1.0/rheMac3) and these all showed the identical comparative methylation difference and peak calls within this LTB4R locus.
According to Precima research, 25% of supermarket prices are not aligned with the merchant's own pricing policy, leading to inconsistencies, customer confusion and lost sales.
Recombinants in sequence pool could lead to inconsistencies among local phylogenies of different fragments of the aligned sequences [ 17].
The collected sequences were aligned using the multiple sequence alignment program, MUSCLE, which processed all sequences at the same time to prevent inconsistencies [30].
The correction procedure addressed technical inconsistencies among the three authentic language versions of the Protocol aligning them, as mandated by the Meeting of the Parties to the Protocol (through decision II/6).
Mr Johnson's own inconsistencies on Syria seem in part to be caused by the attempt to remain aligned with the US leadership.
Allegations of inconsistencies abounded.
Look for inconsistencies.
Avoids errors and inconsistencies.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com