Exact(6)
And as one might expect, the different introspective methods do not all align equally well with the different varieties of privilege.
Reads that align equally well to multiple positions on the genome were removed and duplicated reads were removed in order to minimize PCR amplification bias.
First, since parent genes and pseudogenes are highly similar in nucleotide sequence, short RNA-seq reads derived from one may align equally well to the other one.
When the alignment target is diploid, consisting of two copies of a genome or transcriptome, reads may align equally well to both copies.
First, because parent genes and pseudogenes are highly similar in nucleotide sequence, short RNA-seq reads derived from one may align equally well to others.
Most 100-bp reads align equally well to multiple gene isoforms and in the absence of unique isoform reads the EM algorithm cannot assign isoform reads to a single isoform with any confidence (Table S11).
Similar(54)
Default alignment policies of bowtie were enforced: a valid alignment could have a maximum of two mismatches and if a read aligned equally well to multiple places in the genome, one was chosen at random.
Default alignment policies of Maq were enforced: a valid alignment could have a maximum of two mismatches and if a read aligned equally well to multiple places in the genome, one was chosen at random.
"When you date your picture and its various components has to be aligned equally as intelligently as the making of the picture itself," he said.
If a sequence read aligned equally well to more than one genomic locus, it was discarded.
Reads aligning equally well in more than one location in the reference were discarded.
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