Sentence examples for align draft from inspiring English sources

Mugsy can align draft genome sequences and does not require a reference genome for calculating the alignment or interpretation of output.

Because sequencing resulted in draft genomes (Table  1), we used the closed genomes of C. sakazakii ATCC BAA-894 (BioProject Accession PRJNA12720) and C. turicensis z3032 (BioProject Accession PRJEA39965) as references to align draft contigs using MUMmer [ 49].

We aligned draft genomes against reference Xanthomonas genomes using nucmer [ 31] of MUMmer program (version 3.20) and dnadiff was used to calculate percentage of aligned sequences.

In the first approach, the sequence alignment algorithm Mummer [24] was used to identify sequences unique to each NE strain by aligning the draft genomes of CP4 and JGS4143 with the nine reference genomes.

After aligning the draft map with the A-genome map [ 63], the LOD score was relaxed to 5 with θ =0.35 for a second analysis to merge the linkage groups that could align with the homoeologous A-genome linkage groups.

The genome of S. cerevisiae was aligned to draft genomes of another four species of Saccharomyces sensu stricto group (S. paradoxus, S. mikatae, S. bayanus [ 5] and S. kudriavtsevii [ 6]) using MLAGAN program [ 28] as described in [ 29].

To estimate the percentage of the genome covered by the assembly, we aligned the draft genome to the Sd197 genome sequence using Nucmer [ 51] and compared the length of the reference sequence covered by the assembly with the length of the reference sequence covered by sequencing reads (aligned using BWA [ 49]).

IL and MM have structured, aligned and drafted the manuscript.

LLPdC collected specimens, acquired the molecular sequences genetic, aligned sequences, drafted the manuscript and edited the final version.

Only 0.2% of the predicted ORFs failed to align to the draft genome.The standalone BLASTp search against the RefSeq-protein database resulted in a significant hit for 16,021 of the 17,252 ORFs.

The resulting de novo contigs were aligned against the draft sequence in the Blast's bl2seq multiple sequence aligner.